◆Lists of SCCmec elements identified in MRstaphylococci

Please select the elements for detail view.
 I    1  
B
I.1.1.1 I
subtype 1 specific
ORFs
          
dcs
NCTC10442 AB033763.gbk
COL CP000046.gbk
  I.1.1.2 IA
subtype 1 specific
ORFs
          
dcs, pUB110
PER34, HPV1007 Oliveira et al. 2001
 II    2  
A
II.1.1.1 II or IIa
subtype 1 specific
ORFs, e.g., kdp
operon
subtype-1 specific
ORFs, e.g. Tn554
dcs, pUB110
N315 D86934.gbk
II.1.1.2 II
subtype 1 specific
ORFs, e.g., kdp
operon
subtype-1 specific
ORFs, e.g. Tn554
dcs
RP62A CP000029.gbk
  II.1.n.2 II varient
subtype 1 specific
ORFs, e.g., kdp
operon
          
dcs
           Cha et al. 2005
II.2.1.2 IIb
subtype 2 specific
ORFs
          
dcs
JCSC3063 AB127982.gbk
A4
  II.3.1.1 IIA
common ORFs to
type-IV.2 SCCmec
(IS1182 is
integrated in
mecI). ORFs
specific to
subtype-1, e.g.
Tn554
dcs, pUB110
AR14/0298 Shore et al. 2005
  II.3.1.2 IID
common ORFs to
type-IV.2 SCCmec
(IS1182 is
integrated in
mecI). ORFs
specific to
subtype-1, e.g.
Tn554
dcs
AR13/3635.2 Shore et al. 2005
A
II.3.2.1 IIB
common ORFs to
type-IV.2 SCCmec
Tn554-
dcs, pUB110
AR05/0.1345 AJ810123.gbk
A3
  II.3.3.1 IIC
common ORFs to
type-IV.2 SCCmec
(IS1182 is
integrated in mecI
and part of mecI is
deleted). short J2
region with Tn554
dcs, pUB110
AR14/2188 Shore et al. 2005
II.3.3.2 IIE
common ORFs to
type-IV.2 SCCmec
(IS1182 is
integrated in mecI
and part of mecI is
deleted). short J2
region with Tn554
dcs
AR13.1/3330.2 AJ810120.gbk
A
II.4.1.1           
subtype 4 specific
ORFs
ORFs specific to
subtype-1, e.g.
Tn554
dcs, pUB110
RN7170 AB261975.gbk
 III    3  
A
III.1.1.1 III
subtype 1 specific
ORFs
subtype-1 specific
ORFs, e.g. ??Tn554
subtype 1 specific
region, pT181
85/2082 AB037671.SCCmecIII.gbk
  III.1.1.2 IIIA
subtype 1 specific
ORFs
subtype-1 specific
ORFs, e.g. ??Tn554
subtype 1 specific
region( ips-)**
HU25 AF422651-433696
  III.1.1.3 IIIB
subtype 1 specific
ORFs
subtype-1 specific
ORFs, e.g. ??Tn554
subtype 1 specific
region **
HDG3 Oliveira et al, MDR2001
  III.1.1.4 3A.1.4
subtype 1 specific
ORFs
subtype-1 specific
ORFs, e.g. ??Tn554
dcs
JCSC1716 Chongrakool et al. 2005
  III.1.2.1           
subtype 1 specific
ORFs
subtype-2 specific
ORFs, e.g. Tn554
subtype 1 specific
region
                     
 IV    2  
B
  IV.1.1.1 IVa
subtype 1 specific
ORFs
          
dcs
CA05, JCSC4744, MW2 AB063172 AB266531 http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=mw2
  IV.2.1.1 IVb
subtype 2 specific
ORFs
          
dcs
8/6-3P (JCSC1978) AB063173
  IV.2.1.4 IVF
subtype 2 specific
ORFs
          
subtype 4 specific
ORF
AR43/3636.1 Shore et al. 2005
  IV.3.1.1 IVc
subtype 3 specific
ORFs
          
truncated dcs,
Tn4001
81/108 AB096217
  IV.3.1.2 IVc
subtype 3 specific
ORFs
          
dcs
2314 AY271717
  IV.3.1.3           
subtype 3 specific
ORFs
          
dcs, pUB110
                     
IV.3.1.4 IVE
subtype 3 specific
ORFs
          
subtype 4 specific
ORF
AR43/3330.1 AJ810121.gbk
  IV.4.1.1 IVd
subtype 4 specific
ORFs
          
dcs
JCSC4469 AB097677
  IV.5.1.1 IVg
subtype 5 specific
ORFs
                      M03-68 DQ106887
 V    5  
C
  V VT                                  JSGH17 AY894416
  V.1.1.1 V
subypte 1-specific
ORFs
          
ORFs specific to
subtype 1
WIS(WBG8318) AB121219
 VI    4  
B
  VI IV                                  HDE288 AF411935